[1]李 丹,黄艳丹,卢 艳.GSDMs家族在子宫内膜癌中的表达情况和预后价值[J].医学信息,2023,36(03):63-69.[doi:10.3969/j.issn.1006-1959.2023.03.014]
 LI Dan,HUANG Yan-dan,LU Yan.The Expression and Prognostic Value of GSDMs Family in Uterine Corpus Endometrial Cancer[J].Journal of Medical Information,2023,36(03):63-69.[doi:10.3969/j.issn.1006-1959.2023.03.014]
点击复制

GSDMs家族在子宫内膜癌中的表达情况和预后价值()
分享到:

医学信息[ISSN:1006-1959/CN:61-1278/R]

卷:
36卷
期数:
2023年03期
页码:
63-69
栏目:
生物信息学
出版日期:
2023-02-01

文章信息/Info

Title:
The Expression and Prognostic Value of GSDMs Family in Uterine Corpus Endometrial Cancer
文章编号:
1006-1959(2023)03-0063-07
作者:
李 丹黄艳丹卢 艳
(广西医科大学附属肿瘤医院妇瘤科,广西 南宁 530021)
Author(s):
LI DanHUANG Yan-danLU Yan
(Department of Gynecologic Oncology,Guangxi Medical University Cancer Hospital,Nanning 530021,Guangxi,China)
关键词:
子宫内膜癌Gasdermin家族免疫浸润生物信息学分析
Keywords:
Uterine corpus endometrial cancerGasdermin familyImmune infiltrationBioinformatics analysis
分类号:
R737.33
DOI:
10.3969/j.issn.1006-1959.2023.03.014
文献标志码:
A
摘要:
目的 分析Gasdermins(GSDMs)家族在子宫内膜癌(UCEC)中的表达水平、作用机制及预后价值。方法 通过ULACAN和cBioportal数据库综合分析GSDMs在UCEC中的表达情况;Kaplan-Meier Plotter数据库预测其预后价值;Cytoscape和Metascape探索其功能机制;TISIDB、TIMER分析免疫浸润水平。结果 相较于正常内膜组织,子宫内膜癌组织中GSDMA、GSDMB、GSDMC、GSDMD表达升高,GSDME和PJVK基因表达降低,差异有统计学意义(P<0.05),且GSDMB和DFNA5的表达与肿瘤分期有关;GSDMD低表达患者OS和RFS下降(P<0.05),而其他基因表达量与患者OS、RFS未见明显相关性(P>0.05);GO和KEGG通路富集分析显示,GSDMs家族参与调控细胞分裂周期、泛素依赖性蛋白质代谢过程、内体膜、鞘脂信号通路和AMPK信号通路等;Cox比例风险回归模型分析显示,CD4+T细胞(HR=0.000,P=0.005)、CD8+T细胞(HR=0.001,P=0.001)、GSDMB(HR=1.216,P=0.028)、GSDMD(HR=0.674,P=0.016)和GSDME(HR=1.330,P=0.026)可能是UCEC的独立预后因素;GSDMA、GSDMB、GSDMD与PD-1呈正相关(P<0.05);PD-L1与GSDMA、GSDMC呈正相关,与PJVK呈负相关(P<0.05);GSDMA、GSDMB、GSDMD与CTLA4呈正相关(P<0.05)。结论 GSDMs家族与子宫内膜癌的致病机制、预后价值、免疫浸润相关,是子宫内膜癌诊断标志物以及免疫治疗的潜在靶点。
Abstract:
Objective To analyze the expression level, mechanism and prognostic value of Gasdermins (GSDMs) family in uterine corpus endometrial carcinoma (UCEC).Methods The expression of GSDMs in UCEC was analyzed by ULACAN and cBioportal database. Kaplan-Meier Plotter database was used to predict its prognostic value. Cytoscape and Metascape explored its functional mechanism; tISIDB and TIMER were used to analyze the level of immune infiltration.Results Compared with normal endometrial tissues, the expression of GSDMA, GSDMB, GSDMC and GSDMD in endometrial cancer tissues increased, and the expression of GSDME and PJVK genes decreased, the difference was statistically significant (P<0.05), and the expression of GSDMB and DFNA5 was related to tumor stage ; the OS and RFS of patients with low expression of GSDMD decreased (P<0.05), while the expression of other genes was not significantly correlated with OS and RFS (P>0.05). GO and KEGG pathway enrichment analysis showed that the GSDMs family was involved in regulating cell division cycle, ubiquitin-dependent protein metabolism, endosomal membrane, sphingolipid signaling pathway and AMPK signaling pathway. Cox proportional hazard regression model analysis showed that CD4+T cells (HR=0.000, P=0.005), CD8+ T cells (HR=0.001, P=0.001), GSDMB (HR=1.216, P=0.028), GSDMD (HR=0.674, P=0.016) and GSDME (HR=1.330, P=0.026) may be independent prognostic factors of UCEC. GSDMA, GSDMB and GSDMD were positively correlated with PD-1 (P<0.05); PD-L1 was positively correlated with GSDMA and GSDMC, and negatively correlated with PJVK (P<0.05); GSDMA, GSDMB and GSDMD were positively correlated with CTLA4 (P<0.05).Conclusion The GSDMs family is related to the pathogenesis, prognostic value and immune infiltration of endometrial cancer, and is a potential target for diagnostic markers and immunotherapy of endometrial cancer.

参考文献/References:

[1]Broz P,Pelegrin P,Shao F.The gasdermins,a protein family executing cell death and inflammation [J].Nat Rev Immunol,2020,20(3):143-157.[2]Zou J,Zheng Y,Huang Y,et al.The Versatile Gasdermin Family:Their Function and Roles in Diseases [J].Front Immunol,2021,12:751533.[3]Liu X,Xia S,Zhang Z,et al.Channelling inflammation:gasdermins in physiology and disease [J].Nature Reviews Drug Discovery,2021,20(5):384-405.[4]Miao Y,Chen Y,Mi D.Role of gasdermin family proteins in the occurrence and progression of hepatocellular carcinoma[J].Heliyon,2022,8(10):e11035.[5]Hergueta-Redondo M,Sarrio D,Molina-Crespo á,et al.Gasdermin B expression predicts poor clinical outcome in HER2-positive breast cancer[J].Oncotarget,2016,7(35):56295-56308.[6]Berkel C,Cacan E.Differential Expression and Copy Number Variation of Gasdermin (GSDM) Family Members,Pore-Forming Proteins in Pyroptosis,in Normal and Malignant Serous Ovarian Tissue[J].Inflammation,2021,44(6):2203-2216.[7]Wei J,Xu Z,Chen X,et al.Overexpression of GSDMC is a prognostic factor for predicting a poor outcome in lung adenocarcinoma[J].Mol Med Rep,2020,21(1):360-370.[8]Chandrashekar DS,Karthikeyan SK,Korla PK,et al.UALCAN:An update to the integrated cancer data analysis platform[J].Neoplasia,2022,25:18-27.[9]Lánczky A,Gyorffy B.Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot):Development and Implementation[J].J Med Internet Res,2021,23(7):e27633.[10]Cerami E,Gao J,Dogrusoz U,et al.The cBio cancer genomics portal:an open platform for exploring multidimensional cancer genomics data[J].Cancer Discov,2012,2(5):401-404.[11]Gao J,Aksoy BA,Dogrusoz U,et al.Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal[J].Sci Signal,2013,6(269):pl1.[12]Szklarczyk D,Gable A L,Nastou K C,et al.The STRING database in 2021:customizable protein-protein networks,and functional characterization of user-uploaded gene/measurement sets[J].Nucleic Acids Res,2021,49(D1):D605-D612.[13]Shannon P,Markiel A,Ozier O,et al.Cytoscape:a software environment for integrated models of biomolecular interaction networks[J].Genome Res,2003,13(11):2498-2504.[14]Zhou Y,Zhou B,Pache L,et al.Metascape provides a biologist-oriented resource for the analysis of systems-level datasets[J].Nat Commun,2019,10(1):1523.[15]Ru B,Wong CN,Tong Y,et al.TISIDB:an integrated repository portal for tumor-immune system interactions[J].Bioinformatics,2019,35(20):4200-4202.[16]Li T,Fan J,Wang B,et al.TIMER:A Web Server for Comprehensive Analysis of Tumor-Infiltrating Immune Cells[J].Cancer Res,2017,77(21):e108-e110.[17]Grywalska E,Sobstyl M,Putowski L,et al.Current Possibilities of Gynecologic Cancer Treatment with the Use of Immune Checkpoint Inhibitors[J].Int J Mol Sci,2019,20(19):4705.[18]Rousset-Rouviere S,Rochigneux P,Chrétien AS,et al.Endometrial Carcinoma:Immune Microenvironment and Emerging Treatments in Immuno-Oncology[J].Biomedicines,2021,9(6):632.[19]Ding J,Wang K,Liu W,et al.Pore-forming activity and structural autoinhibition of the gasdermin family[J].Nature,2016,535(7610):111-116.[20]Shi J,Zhao Y,Wang K,et al.Cleavage of GSDMD by inflammatory caspases determines pyroptotic cell death[J].Nature,2015,526(7575):660-665.[21]Zahid A,Ismail H,Jin T.Molecular and structural aspects of gasdermin family pores and insights into gasdermin-elicited programmed cell death[J].Biochemical Society Transactions,2021,49(6):2697-2710.[22]Cortes-Ciriano I,Gulhan DC,Lee JJ,et al.Computational analysis of cancer genome sequencing data[J].Nat Rev Genet,2022,23(5):298-314.[23]Pallen MJ.Microbial bioinformatics 2020[J].Microbial Biotechnology,2016,9(5):681-686.[24]Yang Y,Liu PY,Bao W,et al.Hydrogen inhibits endometrial cancer growth via a ROS/NLRP3/caspase-1/GSDMD-mediated pyroptotic pathway[J].BMC Cancer,2020,20(1):28.[25]Zhang Z,Zhang Y,Xia S,et al.Gasdermin E suppresses tumour growth by activating anti-tumour immunity[J].Nature,2020,579(7799):415-420.[26]Xi G,Gao J,Wan B,et al.GSDMD is required for effector CD8(+) T cell responses to lung cancer cells[J].Int Immunopharmacol,2019,74:105713.[27]Pardoll DM.The blockade of immune checkpoints in cancer immunotherapy[J].Nat Rev Cancer,2012,12(4):252-264.

相似文献/References:

[1]单菲菲,陈 琴,吕建国,等.体力活动与子宫内膜癌关系的病例对照研究[J].医学信息,2018,31(10):62.[doi:10.3969/j.issn.1006-1959.2018.10.019]
 SHAN Fei-fei,CHEN Qin,LV Jian-guo,et al.Case Control Study on the Relationship between Physical Activity and Endometrial Carcinoma[J].Journal of Medical Information,2018,31(03):62.[doi:10.3969/j.issn.1006-1959.2018.10.019]
[2]杨 帆.纽曼系统护理模式对降低子宫内膜癌患者子宫全切术后焦虑抑郁情绪的效果研究[J].医学信息,2022,35(09):184.[doi:10.3969/j.issn.1006-1959.2022.09.048]
 YANG Fan.Effect of Newman System Nursing Mode on Reducing Anxiety and Depression in Patients with Endometrial Carcinoma After Total Hysterectomy[J].Journal of Medical Information,2022,35(03):184.[doi:10.3969/j.issn.1006-1959.2022.09.048]
[3]季福水.AP-4、EZH2基因表达量与子宫内膜癌病灶中细胞凋亡、 上皮间质转化的相关性研究[J].医学信息,2018,31(14):92.[doi:10.3969/j.issn.1006-1959.2018.14.026]
 JI Fu-shui.Correlation between AP-4 and EZH2 Gene Expression Levels and Apoptosis and Epithelial-mesenchymal Transition in Endometrial Cancer[J].Journal of Medical Information,2018,31(03):92.[doi:10.3969/j.issn.1006-1959.2018.14.026]
[4]吴昭怡,黄金智,张庆余,等.靶向PI3K/AKT/mTOR通路治疗子宫内膜癌的研究现状[J].医学信息,2022,35(12):68.[doi:10.3969/j.issn.1006-1959.2022.12.016]
 WU Zhao-yi,HUANG Jin-zhi,ZHANG Qing-yu,et al.Research Status of Targeted PI3K/AKT/mTOR Pathway in the Treatment of Endometrial Carcinoma[J].Journal of Medical Information,2022,35(03):68.[doi:10.3969/j.issn.1006-1959.2022.12.016]
[5]侯梦月,黄金智,张玲莉.SIRT2及其与子宫内膜癌关系的研究进展[J].医学信息,2019,32(05):31.[doi:10.3969/j.issn.1006-1959.2019.05.012]
 HOU Meng-yue,HUANG Jin-zhi,ZHANG Ling-li.Progress in the Study of SIRT2 and its Relationship with Endometrial Cancer[J].Journal of Medical Information,2019,32(03):31.[doi:10.3969/j.issn.1006-1959.2019.05.012]
[6]罗婵娟.子宫内膜癌组织中miR-143的表达及与预后的相关性分析[J].医学信息,2022,35(15):75.[doi:10.3969/j.issn.1006-1959.2022.15.016]
 LUO Chan-juan.Expression of miR-143 in Endometrial Carcinoma Tissues and its Correlation with Prognosis[J].Journal of Medical Information,2022,35(03):75.[doi:10.3969/j.issn.1006-1959.2022.15.016]
[7]帅纬纬,谢利莎,朱 萍.不同护理方式对子宫内膜癌化疗患者负性情绪及生活质量的影响[J].医学信息,2019,32(21):178.[doi:10.3969/j.issn.1006-1959.2019.21.061]
 SHUAI Wei-wei,XIE Li-sha,ZHU Ping.Effects of Different Nursing Methods on Negative Emotion and Quality of Life in Patients with Endometrial Cancer Chemotherapy[J].Journal of Medical Information,2019,32(03):178.[doi:10.3969/j.issn.1006-1959.2019.21.061]
[8]彭端龙,黄 浩.早期子宫内膜癌诊疗研究[J].医学信息,2020,33(01):51.[doi:10.3969/j.issn.1006-1959.2020.01.017]
 PENG Duan-long,HUANG Hao,et al.Research on Diagnosis and Treatment of Early Endometrial Cancer[J].Journal of Medical Information,2020,33(03):51.[doi:10.3969/j.issn.1006-1959.2020.01.017]
[9]张晓黎,张 颖,陈国通,等.环状RNA在妇科恶性肿瘤中的研究进展[J].医学信息,2020,33(03):38.[doi:10.3969/j.issn.1006-1959.2020.03.012]
 ZHANG Xiao-li,ZHANG Ying,CHEN Guo-tong,et al.Study of Circular RNA in Gynecological Malignancies[J].Journal of Medical Information,2020,33(03):38.[doi:10.3969/j.issn.1006-1959.2020.03.012]
[10]谭晓瑜,黄金智,赖锦胜,等.SP/NK-1R及其与子宫内膜癌的关系[J].医学信息,2020,33(07):29.[doi:10.3969/j.issn.1006-1959.2020.07.010]
 TAN Xiao-yu,HUANG Jin-zhi,LAI Jin-sheng,et al.Study on SP/NK-1R and Its Relationship with Endometrial Cancer[J].Journal of Medical Information,2020,33(03):29.[doi:10.3969/j.issn.1006-1959.2020.07.010]

更新日期/Last Update: 1900-01-01